rs30658849 SNP Detail

Summary

• ID
  rs30658849
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95150215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAGCTTC CCTAAGTGCA
  GGACTCACTG TCTGACAACT TCCGGTATGT GCACTTGCTC TAGCGAGATG AGCTGGGCCA
  GCTCTCCGAG GCTGTCCAGA AAGCGGATCT TTCGTGTGAA CTTGGAGCTG AAGAGAAGAA
  TAAACCAGTC TTACTTTGTA TTGGATCCTG GAGGATCTCA CATAGGGAAC AGGGACAAGC
  Y
  GAATGGCACA GCTAGAAAGA GGGCTGGGTA AGACCTCCAC AACCTCGGTA GTGGAGACAG
  CCGAAGGGAT GTCCTTATGC CTCGAACCAG TACCTGATGA AGGGCCGAAC CAGTGCCAGG
  AAGGCCTTCA CATACCACGT AGCGTGGACG ACCACCAGGG CGCGAAGGTT TTTCCGAAGC
  CTGAGGAAGA GTCCAATACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45451479	mCV22580054	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C		C
ss46772510	NES10660357	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	C	C	C	C	C	C	C	C
ss135510278	ENSMUSSNP5420896	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30658849					SNP	T	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772510	NES10660357	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95150215 () rs orientation: forward

Symbol	Name	Function Class
Bnipl	BCL2/adenovirus E1B 19kD interacting protein like	Intron
Cpgi13505	CpG island 13505	1828 bp distal
Gm128	predicted gene 128	1306 bp upstream
Rr580872	regulatory region 580872	1685 bp distal
Tssr34451	transcription start site region 34451	1879 bp upstream
Tssr34452	transcription start site region 34452	1801 bp upstream
Tssr34453	transcription start site region 34453	1758 bp upstream
Tssr34454	transcription start site region 34454	1722 bp upstream