rs30658640 SNP Detail

Summary

• ID
  rs30658640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145647541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCACACTC CCGTGCCATA
  GGAAGTTGCT GAAAATATTA ATTTGCCTGA CATTTCCTCT TTGTACACAT GTGAACGTGG
  AGACCAGAGG ACCACCCTGG GTGTCAGCCT TATCTTCTAC CTTGTTTGAC TTTTTCTCTG
  CCATTCATGT ATGTATGCCA TGTCAGGCTG GCTTTAGAGC TGGGAATTCT GTCTCTGCCT
  Y
  CCACCTTGCC ATGTGAGCTT TGAGATGACA GACATGAGTT AACTGATCAG GCTTTTTGCA
  AAGGCTGTGA GAATTCAAAT TCTGATCTAG AGCCATCTCT CCAACCCCTG ACATTTTTTA
  ACCTATAGTT TGTAAGTAAT TATTAAGCTA CCTGGCTTTT ATTTTACCTT CCCATAGTCT
  TCTTCCTCTG GTCATTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45452849	mCV24197572	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss136040834	ENSMUSSNP1461069	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss321009179	CHEV_3_145604750	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30658640					SNP	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145647541 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2410004B18Rik	RIKEN cDNA 2410004B18 gene			Intron
				Noncoding-Transcript-Variant
Rr398109	regulatory region 398109			264 bp upstream
Rr586876	regulatory region 586876			1873 bp distal
Rr586877	regulatory region 586877			156 bp proximal
Rr586878	regulatory region 586878			370 bp proximal