rs30657742 SNP Detail

Summary

• ID
  rs30657742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151556553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATCCAGGG ACACCTTGTC
  CCCTGGCCAG TGTTTGTAAA CAGTGTCTGG ACCTGCCCCA GCACCAAGGA AAGACTCCTG
  TCCCTGTAGG AAAGTCTCCT GTTTCACTCT GCACACCCCC AGCTGTGGAA TGGGCCTGGG
  GCACTTATCC AAGGTTGTGC AGGTTCCTAA AGCCACAAGA CTCAGAAGCA AGCAAGCTTA
  Y
  TGTCAGCTTT AGCGACTAAG GCACTGACTG GCCACCTTAC CATGCTCCAG CCTCAGGAAT
  CACAACAGAC AGAGCAATTA TCTTCTTGGG GAAAGAAAAA AAGAGCTGGA TAACAAGTGA
  TGATATGGGG ACGTAAACCC AGTCCCTCCT TGATTGAGGC GCAGAAGCAG GCAGCTCCCT
  GCAGCACTTG GTCACAGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45453625	mCV24029254	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss136099233	ENSMUSSNP1736777	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss321027285	CHEV_3_151513880	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30657742					SNP	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151556553 () rs orientation: forward

Symbol	Name	Function Class
Gm31596	predicted gene, 31596	within coordinates
Rr587424	regulatory region 587424	509 bp proximal