rs30657647 SNP Detail

Summary

• ID
  rs30657647
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32582560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGA AATCTGCCTG TCTCTGCCTC
  Y
  CGAGTGCTGG GATTAAAGGT GTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45453025	mCV22804964	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss320698374	CHEV_3_32427333	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30657647					SNP	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss134750135	ENSMUSSNP3623648	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32582560 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13058	CpG island 13058	916 bp proximal
Gm66043	predicted gene, 66043	278 bp downstream
Mfn1	mitofusin 1	1054 bp upstream
Rr374786	regulatory region 374786	1502 bp downstream
Rr397636	regulatory region 397636	841 bp upstream
Rr574980	regulatory region 574980	848 bp distal
Rr574981	regulatory region 574981	564 bp proximal
Rr574982	regulatory region 574982	1065 bp proximal
Rr574983	regulatory region 574983	1170 bp proximal
Tssr28756	transcription start site region 28756	1041 bp upstream
Tssr28757	transcription start site region 28757	1121 bp upstream
Tssr28758	transcription start site region 28758	1146 bp upstream
Tssr28759	transcription start site region 28759	1168 bp upstream
Tssr28760	transcription start site region 28760	1227 bp upstream