rs30656902 SNP Detail

Summary

• ID
  rs30656902
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119633727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCATATCGT CAGATAATCA GTTTTAGGAA GGAGCATACG
  TGATTTTCAT CTTCTCATTT ATGAAATTTC TCAAGTTGTC AGTGAAAACA ACCACTAAGC
  Y
  TTTAACTTTA GAAAACACAA AGTAGAACAC AGAGTGAGGC GAGCTGGCAG CAGCCCTCAG
  CAGTGCTGGA TGGACAAGTC GATACTGTTC TCAAATGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45950328	mCV22565480	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss48077287	NES11882750	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C		C	C	T	T		C	C	C	C		C
ss133592443	ENSMUSSNP4716471	ENSEMBL	ENSEMBL_Sanger	f	SNP		C								C
ss321929160	CHEV_6_119606784	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30656902					SNP	C	C	C	C	C	T	C	T	C	C	T	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48077287	NES11882750	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119633727 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Erc1	ELKS/RAB6-interacting/CAST family member 1			Intron
				Noncoding-Transcript-Variant
Gm67959	predicted gene, 67959			within coordinates
Rr637722	regulatory region 637722			1634 bp distal
Rr637723	regulatory region 637723			1110 bp proximal