rs30656872 SNP Detail

Summary

• ID
  rs30656872
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151477495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAGGGAA AGGAGGAGAA
  CTAGAAAAAC AACTGTTATA AAACGGTCAT GAACCCAAGT GCCATGGTTA AATATTTGAC
  CCTGTCAGTT AATACAGTGA AAGCTAATCC CCGGTGTGAT AACATTTAGA GGTGCAGCCT
  CATGAATGAG ATCGTTTCCC TTATGAAAGA GGCTCCAAAG AGCTGCTTCC ATTGCCAACA
  Y
  GTGAAAAGAG CTATGAGGTG CCAGCTGTGA GCCAGCAGCA GACCCTTACT AGATGCTGAA
  TCTGTCATCT CCATATGTGA GTAGTGTACC CCACTCCACT GATTAACTGA TGTGGCACGA
  AGCATTTCCA GGGAGAATAC TTAGTGGACA CCTATAAACC AACATATAGA AAAGATAGTC
  CTTCCTAGCT GACAGGTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45453806	mCV24030309	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss136098020	ENSMUSSNP5388151	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss321026842	CHEV_3_151434822	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30656872					SNP	T	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151477495 () rs orientation: forward

Symbol	Name	Function Class
Rr587415	regulatory region 587415	799 bp distal
Rr587416	regulatory region 587416	472 bp distal
Rr587417	regulatory region 587417	541 bp distal