rs30656424 SNP Detail

Summary

• ID
  rs30656424
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:69034304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCTCCCAGG AAGCCGGCCG CCGCCTGCGT CGCCCGCCCG
  TCCGCTCGCT TCCTCTCGCC CGCCGGGCCT CCGCTTCCTG GCTGGCCTCT CCTGCCCTGA
  R
  CTCGGGTACC ACAGCAGCTC TGGCGAAGAC GACTGCGGGG CCAGCGGCGG CGGCGGCAAC
  GGCGGCGGAA TGTGCTGCCG GCTGAGAGGG GGAGGCAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45451753	mCV24615983	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss135265149	ENSMUSSNP3910051	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss320791956	CHEV_3_68930893	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30656424					SNP	G	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69034304 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13258	CpG island 13258			within coordinates
Kpna4	karyopherin subunit alpha 4			Coding-NonSynonymous
				mRNA-UTR
Rr397714	regulatory region 397714			39 bp upstream
Rr578129	regulatory region 578129			996 bp distal
Rr578130	regulatory region 578130			915 bp distal
Rr578131	regulatory region 578131			767 bp distal
Rr578132	regulatory region 578132			111 bp proximal
Tssr902	transcription start site region 902			56 bp downstream
Tssr33536	transcription start site region 33536			1601 bp upstream
Tssr33537	transcription start site region 33537			86 bp upstream
Tssr33538	transcription start site region 33538			65 bp downstream
Tssr33539	transcription start site region 33539			96 bp downstream
Tssr33540	transcription start site region 33540			127 bp downstream