rs30656298 SNP Detail

Summary

• ID
  rs30656298
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83696052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCGGCAG CATCACCAGG
  AACCCTGTTA CAAATAGAAA TTCTCATGTC CTGGCCAACA TCTCCTGTAC CAGAGCACCT
  CAGGGAGGGT CCAGAAGTGG AGAGCTGTTG TAGCCTTTCT GATAGAGCCA AGCTCCCGGC
  ATGCACACTG ATCCTCACAA GTGGTCCTTG AACCTGCGTC TGTCCCTATC CTCTGCTAGG
  M
  AGTAAGTTTC CTGATTGCAG AGATGTGACC ATCTAGCTGG TCATTTGATC TACGGTAGTA
  ACATCTTGTG GGTGATGACG TAAAGGCACA TCCTATAGGC TGGATGATTG ACTGGGTGTT
  TCTTCATTGT ATGCTTGAGT AAATCTACAC TTGATGTTAG GAGAGAGGTG CCCTCTGAAG
  GTAGAGGGCA AAGGTACGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45452721	mCV22785999	ABI	CRAMUS_MOUSE	f	SNP		C	A					A		A
ss51559298	NES14677640	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	A	A		C	A	A	A	C	A	A	C
ss135417534	ENSMUSSNP5774967	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30656298					SNP	C	C	A	A	A	A	A	A	C	A	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51559298	NES14677640	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83696052 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13301	CpG island 13301	772 bp proximal
Gm7115	predicted gene 7115	980 bp upstream
Gm26771	predicted gene, 26771	within coordinates
Gm66689	predicted gene, 66689	529 bp upstream
Rr578903	regulatory region 578903	664 bp proximal
Rr578904	regulatory region 578904	1184 bp proximal
Rr578905	regulatory region 578905	1487 bp proximal
Rr578906	regulatory region 578906	1616 bp proximal
Tssr33830	transcription start site region 33830	1195 bp downstream
Tssr33831	transcription start site region 33831	1228 bp downstream