rs30655403 SNP Detail

Summary

• ID
  rs30655403
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116697156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATGATGATCA TTAAAATGAG GAGAGACCTG AAGCTTGTGC CGACCACCTG CAGCACCTAC
  TAAGTCCGAA GACCCATGGG CATCGCTATC GAGGAACGCT GAAGTCTGGG TTTCCCAGCT
  CACATTCAAG TGGGCTAAAT AACCTGGGCC TTTATGTGTA ATTCTGCATC CCTAAGGGAA
  CATTGTACCT GAGATGACAT GACTCTCAGC ATCTCATGCC AGATTTAAAA CTGTAAACTG
  GAATGGATAG CAGATGAAGA CAATTATCTC AGGCAAAAAA AAAAAAAAAA AAAAAAAAAA
  R
  AAAGAAAGAA AGAAAGAAAA AAAAAAGAGA AAAGAAAGAA TAAATGGAGA TTGTGTCTTT
  GGGAATGAGA CAGGTTTGGT GTAGCCCAGG CTGGCCTTTA ACCAGTTGTA TAACCAAAGA
  TAACCCTGAA CCTCTGATCT GCCTGCCTCT GTTTCCTGGG TGGTTTACAG GTGTGCACCA
  CTATATCTGG TTTTAAGGGA ACTGTAATTT TCATGACGAT GCTGCTATGG TACTTTAAAG
  ACTACATTTA TGTTTGACTA GTTTATTTAA AAGATTTTGT CTTAGAGTTT AAAAAAAAAT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45452515	mCV24793239	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss135674990	ENSMUSSNP1002137	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30655403					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116697156 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frrs1	ferric-chelate reductase 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr583800	regulatory region 583800			582 bp proximal
Rr583801	regulatory region 583801			613 bp proximal
Rr583802	regulatory region 583802			854 bp proximal
Tssr31391	transcription start site region 31391			70 bp upstream
Tssr31392	transcription start site region 31392			156 bp upstream
Tssr31393	transcription start site region 31393			190 bp upstream
Tssr31394	transcription start site region 31394			212 bp upstream
Tssr31395	transcription start site region 31395			857 bp upstream