rs30655399 SNP Detail

Summary

• ID
  rs30655399
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124018244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAATATC TATAACCTCT
  GTAATTCTGT TTCTTCAGTA TTTTTATGTC AATTATGACT TTTTAAAAAT GTTCCAAGTT
  CTAAGATTTT GTCTCAGAAT AACAAAAAAA AAATAGGTTA AACAAAAATA GTTAAAATAT
  GTACAACAAA ATAAATTTAT AAGATAAAAT TTATTTGAAA TAAAACAAAA GAAATCCCAC
  W
  ATCTGCAAAG GCTTAGGACC ATGTTTTGTT TTTAAAAAAT CCCAGGTCAA TTATTATAAC
  CACCTAAATG TTTATAAGGG TTGCCCTTAT TACTGTAAGA AATGGGTCAT TGTTTACTGA
  TGTTACCCTG TTTTTGAAAT TTCCTGGGAC CAAAAAAAAA AAAAAAAAAA AAAAAAGAAC
  AGGTACTTTA AGATTTAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45452511	mCV25183675	ABI	CRAMUS_MOUSE	f	SNP		T					A	A
ss60445868	NES15938715	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	T	A	T		A	A	A		T	A	A		A
ss135782541	ENSMUSSNP2680905	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss320926391	CHEV_3_123927513	CHEVERUD	SCREENING_POP	f	SNP											A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30655399					SNP	A	T	A	T	A	T	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445868	NES15938715	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124018244 () rs orientation: forward

Symbol	Name	Function Class
Rr584579	regulatory region 584579	1584 bp proximal