rs30654872 SNP Detail

Summary

• ID
  rs30654872
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129966326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCTGTGGA GTATGTGTCT AATACGCCAC TGGGGCTAGG
  AGCACTCCCC TAGGTACTGC TGTCAGCAAT CATTTGAATC ATTTTTACAA AGCATTCTAC
  W
  CTGTACCTGA AGCCTCCCAT CTTACTTCCC AGTGCCTTGA CGGTCCCACA GCACGTCTCC
  TGGGATCTAC CATCCATTTG TCTGAGCACT GCTTTATTG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46970409	NES10875494	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	T	A	T	A	A	A	T	A
ss135892763	ENSMUSSNP5834525	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30654872					SNP	A	A	A	A	A	A	T	A	T	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46970409	NES10875494	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129966326 () rs orientation: forward

Symbol	Name	Function Class
4930502M04Rik	RIKEN cDNA 4930502M04 gene	within coordinates
Cpgi13822	CpG island 13822	115 bp proximal
Rr585141	regulatory region 585141	128 bp proximal