rs30654429 SNP Detail

Summary

• ID
  rs30654429
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121220789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTA CGGCTGGGTC TCCGGGAGTT
  R
  CCGCCCCCGC CATCCGCCTG GGCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45451340	mCV25305167	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	G
ss320903401	CHEV_3_121130058	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30654429					SNP	G	G	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121220789 () rs orientation: forward

Symbol	Name	Function Class
Cnn3	calponin 3, acidic	Intron
Cpgi13758	CpG island 13758	within coordinates
Gm42928	predicted gene 42928	within coordinates
Gm42929	predicted gene 42929	906 bp upstream
Rr397975	regulatory region 397975	522 bp downstream
Rr584073	regulatory region 584073	360 bp distal
Rr584074	regulatory region 584074	within coordinates
Rr584075	regulatory region 584075	1796 bp proximal
Tssr31441	transcription start site region 31441	599 bp downstream
Tssr31442	transcription start site region 31442	565 bp downstream
Tssr35415	transcription start site region 35415	332 bp downstream