rs30654304 SNP Detail

Summary

• ID
  rs30654304
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:149738531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGGTTCCA GTTCACCTTA AAATCTTCAC
  TAAGGTAATA GAGTAAAaaa taaacaaaca gacaaacaaa caggcaaaca aGTCCCCTCT
  GGGTGCCCCT TAAAAAGAGA GACCCCACTT AGTCAAAGGA TGAAGCAGTC CCCAGAAGTC
  Y
  CGAGAACCCT CAGTCACCTC TTCAGTTTCA TTTCTGGAAA CCCTTACATA ATCTGAGCTA
  ACATGCCTCC TGCTGACCAG TGGAGCCCAA GAACACAATA TCCACTGCCC TCAGTCTGAC
  ACAAAACAGC CAGTGGCCAG ACTGCTGGCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss44950209	mCV24644042	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss145700940	ENSMUSSNP6662581	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss320043160	CHEV_1_151709910	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30654304					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149738531 () rs orientation: forward

Symbol	Name	Function Class
Pla2g4a	phospholipase A2, group IVA (cytosolic, calcium-dependent)	Intron
Rr420110	regulatory region 420110	30 bp proximal