rs30653926 SNP Detail

Summary

• ID
  rs30653926
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17763654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTGACATT TTTAAGTAAA
  TAAAATTAAA TTCTGTCTGT GGAATTAATG TTCTCTCTCT CTCTCTCTCT GGACATTAAA
  TGCCTCTAAA ATTAGGATTA GTCTTGTTTG GTTTTCTTTT TTCCCCCCGC TATTTTCTAT
  TTTCCATTTT CTCCCTCCCC AACTCCATTG TTTTCAATGA GTAAATTCTT TGTAAAATAG
  Y
  TTGTCCTAAA ACTATTAGTT TGGGGGCTAA TGTGAATCAA CAAACAGCTA CTGATAATAC
  AAAAAGCTAA ACTATTGGGA ATTCTTGACA TTAATAGAGA CTTCACACTT ATTTTTGTAA
  CCCATTTGGA AAGTTGTGAA GATATTAGCA TCATGAGCCT GAGTTACTGG CTTTTCTTTT
  CCTGAGCTGG TTTACATTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	MSM/Ms
ss45949483	mCV22806607	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss133022211	ENSMUSSNP5455706	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	MSM/Ms
rs30653926					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17763654 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm52895	predicted gene, 52895			1506 bp upstream
Rr626856	regulatory region 626856			280 bp proximal
St7	suppression of tumorigenicity 7			Intron
				Noncoding-Transcript-Variant
Tssr55099	transcription start site region 55099			770 bp downstream