rs30652860 SNP Detail

Summary

• ID
  rs30652860
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19317475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGTTCTCT AAGCAATCTA GTTAAAGTAA CTCAGTTTTA
  AAAAGTGAAT TACATTATGA ATTAAAATCA AGTTTTATTC CACTTAAGAG TGTCACTTAA
  R
  AAAATGTGCT TTATACACCA AGACACAAGC TTAACAAACG TTTCTTAAAA GATCAAAAAT
  TTTAAGGCCA CATACTGGTA GAATTTTATC TTTAATAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45450579	mCV24211562	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss134666388	ENSMUSSNP4978838	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss320678288	CHEV_3_19163311	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30652860					SNP	A	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19317475 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde7a	phosphodiesterase 7A			Intron
				Noncoding-Transcript-Variant
Rr573966	regulatory region 573966			132 bp proximal
Rr573967	regulatory region 573967			1644 bp proximal
Tssr32690	transcription start site region 32690			1616 bp downstream
Tssr32691	transcription start site region 32691			1648 bp downstream
Tssr32692	transcription start site region 32692			1686 bp downstream
Tssr32693	transcription start site region 32693			1696 bp downstream
Tssr32694	transcription start site region 32694			1785 bp downstream