rs30652590 SNP Detail

Summary

• ID
  rs30652590
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130860349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAC TTGGACAGAG TGCAAGCCAA
  W
  TTTTACTTTA AAAATGTTGT GTCCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45451413	mCV23285707	ABI	CRAMUS_MOUSE	f	SNP		A	T				T		A
ss51635546	NES14652438	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	T	T		T	A	A	A		T	A	A	T		A
ss135903517	ENSMUSSNP4485536	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T						A
ss320967493	CHEV_3_130769618	CHEVERUD	SCREENING_POP	f	SNP												T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30652590					SNP	A	A	T	A	T	T	T	T	A	A	A	T	T	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51635546	NES14652438	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130860349 () rs orientation: forward

Symbol	Name	Function Class
Rr585259	regulatory region 585259	1216 bp distal
Rr585260	regulatory region 585260	1537 bp distal
Rr585261	regulatory region 585261	1474 bp distal