rs30652574 SNP Detail

Summary

• ID
  rs30652574
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:21996926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAC AGATCCTGAA ATATCACTGA
  R
  CAACTTCTCT AGTGAACTGC CTAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45451309	mCV24792760	ABI	CRAMUS_MOUSE	f	SNP		A	A					A	G
ss51434350	NES14436879	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	A	A		G	G	G		A	A		G
ss134684858	ENSMUSSNP1899717	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss320683686	CHEV_3_21841684	CHEVERUD	SCREENING_POP	f	SNP												A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30652574					SNP	A	A	A	G	A	A	A	A	G	G	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51434350	NES14436879	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:21996926 () rs orientation: forward

Symbol	Name	Function Class
D3Mit176	DNA segment, Chr 3, Massachusetts Institute of Technology 176	1512 bp proximal
Gm31813	predicted gene, 31813	within coordinates
Rr574169	regulatory region 574169	659 bp distal
Rr574170	regulatory region 574170	206 bp proximal