rs30650906 SNP Detail

Summary

• ID
  rs30650906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152987649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAGCTTT GTCCCAGAGG
  ACCGGAATTC AGTTCCCAGC ATCCATATCA GGTGGCTCAC AACCACCTGT AACTACAGCT
  CCATGAATTG ACATTCCCTT CTGGGCTTCA TGGGAGCCTG CTCATAAACC CACTACATAC
  ACATGAATAA TGAAAAAAAT ATGCCGGACA TTGCTCCCGG GGTGTGTCTG AGTCATGAAA
  Y
  CTGGGTGTTG CTGAGTCATG GAACACTGAG TCTTACCTTA CTTTGAGACA CACTGAAAGA
  AGGGTGCCTG GGTGAAAAGA GCAGAGGTTT AAAGACCATT CCTGAGACAG CCGGTGGGGC
  TTCTGGGGCA TCCCCACATA AAACAGGCAG TGAACACCTG CCTCTCCAAA TTCCAATCTT
  TGTCAGCACG TGGTGCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47469997	NES10330932	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	T	C	C	T		C	C	C	C		C
ss136107416	ENSMUSSNP811080	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss321030499	CHEV_3_152944976	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30650906					SNP	T	C	C	C	C	C	T	C	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47469997	NES10330932	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152987649 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587669	regulatory region 587669			116 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant