rs30650127 SNP Detail

Summary

• ID
  rs30650127
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129923895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACAGACT GCATTGCTGA
  TTTCGTGTTG CCAGTGGAAC CAGGCGTTAA AGCATCCTGG TTTGTTTTGA TGGAATCACA
  GGGTCACTGC TGTAGGCTAA GGAATTATCT AGACCTATAT GCAACAAATA TTTAAGTTAT
  TTCTGTAGAC GGCCATGCCA TTAAAAAAAA ACCTATATGC GTGGTGTGCC TGAGTGTAGT
  Y
  TGTGAGCCAC TATGGCACCA AATCATCCTG ATAAAGTGAT TTACGATTTA TGTTCCTTTG
  ATCTGCAGGG CGGCTACACT GTCTTCGAGC ACACACTGCC AGAGTGTATG TCTGGTGCCA
  TGCAGGTCAG AAGAGGGCAT TTCAACTTCC TGAAGCTGGA CTAAGAGATG GTTGTGAGCC
  ACCATGTGAG TGCTGGGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46970189	NES10877482	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30650127					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46970189	NES10877482	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129923895 () rs orientation: forward

Symbol	Name	Function Class
4930502M04Rik	RIKEN cDNA 4930502M04 gene	1255 bp upstream
Rr585137	regulatory region 585137	1297 bp distal
Rr585138	regulatory region 585138	131 bp distal
Rr585139	regulatory region 585139	123 bp proximal