rs30650125 SNP Detail

Summary

• ID
  rs30650125
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129923813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAATGAGC AGCTGTTTCC
  TGAAATTCTG ACATTTGAGG GAGTGAGGTT CTTAGGCATG ACCACGAGGG GGCTGAGCGT
  CTGCAACAGA CTGCATTGCT GATTTCGTGT TGCCAGTGGA ACCAGGCGTT AAAGCATCCT
  GGTTTGTTTT GATGGAATCA CAGGGTCACT GCTGTAGGCT AAGGAATTAT CTAGACCTAT
  M
  TGCAACAAAT ATTTAAGTTA TTTCTGTAGA CGGCCATGCC ATTAAAAAAA AACCTATATG
  CGTGGTGTGC CTGAGTGTAG TCTGTGAGCC ACTATGGCAC CAAATCATCC TGATAAAGTG
  ATTTACGATT TATGTTCCTT TGATCTGCAG GGCGGCTACA CTGTCTTCGA GCACACACTG
  CCAGAGTGTA TGTCTGGTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46970187	NES10877480	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30650125					SNP	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46970187	NES10877480	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129923813 () rs orientation: forward

Symbol	Name	Function Class
4930502M04Rik	RIKEN cDNA 4930502M04 gene	1337 bp upstream
Rr585136	regulatory region 585136	1954 bp distal
Rr585137	regulatory region 585137	1215 bp distal
Rr585138	regulatory region 585138	49 bp distal
Rr585139	regulatory region 585139	205 bp proximal