rs30649984 SNP Detail

Summary

• ID
  rs30649984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152988177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCACACT GCTGCCTGGA
  CTATGCTTTC GTGAAGTTAG CTAAATATTT AATGGAATAT TAAGAGAAAA TGTCTGTCTA
  TGTAATGCAA ACATATTGTT AGGCTGGCTG AAGGGTCGTA TCTTGATTAA GCTGAATGTC
  AGGAGCATCA GCAATACTTT CCCAGGATTC CCTAAATACG CTCTCAGTAG ACACTCCACA
  Y
  AGCACCAAAG CAGCCCTGCC TTTCATGTAC AGCTGGCATG CACCACGGGG GAAGAGCTGG
  GCCAGCTACG CGGTGCCCGA TTCTTCTGTA CATCTGGCTG ACGGCTCACA CTTCTAAAAA
  TACAACACTA ACTCGAGAAT TGGTCTTTCT GACCCTCTTT GTACAAATAT TTATAATTCT
  AGAATGTGCG GCAGATCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47469985	NES10330936	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C	T		C	C	C		C
ss136107443	ENSMUSSNP945707	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss321030509	CHEV_3_152945504	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30649984					SNP	T	T	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47469985	NES10330936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152988177 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587669	regulatory region 587669			within coordinates
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant