rs30649403 SNP Detail

Summary

• ID
  rs30649403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135224680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGC TATGCAGGGA GCCAGCAAGC
  Y
  CCAGCCACCC TCCTGTCTCC ACCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45451195	mCV23957303	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss135926871	ENSMUSSNP4513919	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320971960	CHEV_3_135181883	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30649403					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135224680 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Manba	mannosidase, beta A, lysosomal			Intron
				Noncoding-Transcript-Variant
Rr585732	regulatory region 585732			1369 bp distal
Rr585733	regulatory region 585733			1220 bp distal