rs30649239 SNP Detail

Summary

• ID
  rs30649239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129923305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCAGTGTC TGAGGTGAGA
  TTGGAGGCAG GGTCAGGAGA AGAGAAGCCC AGGAAGCTTG TGGGTCAGAT AGCTCGAAGC
  ACTCGAAGAG ACCCTACTCC AAACACGGTG GAAAGCAAGG ACAGACACTC CCCCTCTCTC
  TTACACACAC ACACACACAC ACACACACAC ACACACACAC ACACTGGCAA AGAGGTATTT
  Y
  AGTGAGTGTA TAATGGGTGA GTGAAGGGTA GTGCTTGCCC ACAGTGCAAT GACTTTGAAT
  TTCAGAACGT CCTGAATGCT GGGGTTACAG GTGTGTAATC TCATAGACCC TGCATGTATG
  TGTGTTGTCG GGGATGGAGC CCTGTATGTT AGGCGGGAAC TCTCCCAGCT GAGCTATGCA
  ATCAGTCCTG GACTTTTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46970181	NES10877508	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30649239					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46970181	NES10877508	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129923305 () rs orientation: forward

Symbol	Name	Function Class
4930502M04Rik	RIKEN cDNA 4930502M04 gene	1845 bp upstream
Rr585136	regulatory region 585136	1446 bp distal
Rr585137	regulatory region 585137	707 bp distal
Rr585138	regulatory region 585138	259 bp proximal
Rr585139	regulatory region 585139	713 bp proximal