rs30649237 SNP Detail

Summary

• ID
  rs30649237
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129922847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGGGAAT CAAAGGCCAG
  GATGTTCATG AGCTTAGGAT TTTAAAAAAT TTATTATGTC GGGTCCTAAA AAAGTAGTCC
  TCATAGCTTC TGATTAGCAT GGCAAACACC ACAGCTGTGT CTGATGAATA GTAATGTTCT
  CAAACGTCTG AAATAAAACC TGGACCTGGC AAAGCAGCCA TCCCAGGACA TTGGGGCAAC
  R
  CTTGGGTTTG GAGCTAAGTG ACCGGAATTG TGTACATGGG GCTCTGAGGA TAGACTGTGA
  TGATTCTGTG ACTCAAAGTA GCCTTATTAA TCCATGTAAG ATATTGAATG TTTCATCCTG
  GAGGTATAAA GAGTGGTTAA TAGGGGGGGC TGGGAGACAG CTCAGTGGGG AAAGTGCTTT
  CCATGCGTGA GTGAAGATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46970179	NES10877637	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30649237					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46970179	NES10877637	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129922847 () rs orientation: forward

Symbol	Name	Function Class
Rr585136	regulatory region 585136	988 bp distal
Rr585137	regulatory region 585137	249 bp distal
Rr585138	regulatory region 585138	717 bp proximal
Rr585139	regulatory region 585139	1171 bp proximal