rs30649235 SNP Detail

Summary

• ID
  rs30649235
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129922583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCACTTA GCAGGGAGAT
  CCTTCCCATC AGCTATGGTT ATTGTGCATG CTTTTGGTGC CAAGCAGACG CTTAGGTTCT
  CCAGAGAGGA CTCTCCAGTG GAAGCTCCCA CTAAGCTGTC AGCTCATGGC AACGCGTTGC
  AGTCGAGTGA CAGAAGCGAC ACACAAACCG ATACACAGTA AACCTGTGAG TGTCACAGTC
  R
  AAATGCAGAG CAGGTCCTCT CTCGAGAGCG ATTTACCCTT AGCATCAGAC ACGCTCCTCC
  TTCATCAGGG AATCAAAGGC CAGGATGTTC ATGAGCTTAG GATTTTAAAA AATTTATTAT
  GTCGGGTCCT AAAAAAGTAG TCCTCATAGC TTCTGATTAG CATGGCAAAC ACCACAGCTG
  TGTCTGATGA ATAGTAATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46970177	NES10877635	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30649235					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46970177	NES10877635	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129922583 () rs orientation: forward

Symbol	Name	Function Class
Rr585136	regulatory region 585136	724 bp distal
Rr585137	regulatory region 585137	within coordinates
Rr585138	regulatory region 585138	981 bp proximal
Rr585139	regulatory region 585139	1435 bp proximal