rs30648736 SNP Detail

Summary

• ID
  rs30648736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104961183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTG TAACACGTAC ATATAAGAAC
  Y
  CAAGTATTTG AGTGCACAAG TAACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45449644	mCV23788083	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss135572946	ENSMUSSNP6687121	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs30648736					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104961183 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13657	CpG island 13657	624 bp distal
Cttnbp2nl	CTTNBP2 N-terminal like	721 bp upstream
Rr367520	regulatory region 367520	717 bp downstream
Rr582659	regulatory region 582659	927 bp distal
Rr582660	regulatory region 582660	231 bp distal
Rr582661	regulatory region 582661	673 bp proximal
Tssr34913	transcription start site region 34913	1293 bp upstream
Tssr34914	transcription start site region 34914	1150 bp upstream
Tssr34915	transcription start site region 34915	929 bp upstream
Tssr34916	transcription start site region 34916	880 bp upstream
Tssr34917	transcription start site region 34917	716 bp upstream
Tssr34918	transcription start site region 34918	1009 bp downstream