rs30648331 SNP Detail

Summary

• ID
  rs30648331
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129922254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACAGAAT TCAGTTGCTC
  TCCATAACCT GAGGCCATTC TGATTCTCAG AATGAATGCT CTTATCCCAG GCCTCAATGA
  GCCTTGAGTT TACCTTATGG CTACTGTCTA TTATATCCCC AAATGGGCTG AACAAATGAA
  AGATTAAGGC CACTATATGT TTACCAGCTG GTGGAAATGA CTGTACAAGA AAACAAACTC
  Y
  GTGCGTGTAG AAATGAAATG TTTAGTCATT CTCAGACCAG AGCAGCCTGT TTGTTTACCC
  GGCTTTCCAC ACTGGCTGCT TTCAGGACTC CAGGAATCCT GGCAGTCGGT GCTCGCTTAG
  GGCTGTTCCA CCCACTTAGC AGGGAGATCC TTCCCATCAG CTATGGTTAT TGTGCATGCT
  TTTGGTGCCA AGCAGACGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46970173	NES10877629	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30648331					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46970173	NES10877629	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129922254 () rs orientation: forward

Symbol	Name	Function Class
Rr585136	regulatory region 585136	395 bp distal
Rr585137	regulatory region 585137	within coordinates
Rr585138	regulatory region 585138	1310 bp proximal
Rr585139	regulatory region 585139	1764 bp proximal