rs30647677 SNP Detail

Summary

• ID
  rs30647677
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143655779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATACAAA GCATGCTTGG
  AAGTTTTCCC AGTCTCGTTT GAGAGCCTGT AGACAGGGGT GAGGCAGCTG AGAGCAGTTA
  AGGTTTTCAC CCCACAGGCA ACTTGTCGAC CCGTGGGAGA ATCTTCTCGG GACAAGAGTG
  GCATTGTTAG AGACCTAACA AGTGACTCTT GGTCTCATCA TGCTGTTTCC TTTTATACAG
  Y
  TGCTGGATGG CTGACAGCTT TGGCCTTTCT ATAGGGTCCA TTCACTTCAA CTTATCTAGA
  TCTTAAACCC TCTTTTGAGC AGCTTCCTGT TGCCCAGAGC AGTCCTAGCA AAGATGGCGG
  CATTTCCATC TGTAGCTAAG ATGAAAGGCA CTTCTCTCTT TTGACTTACT GATTAGATGT
  GCATTAGTTT CATGACCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45449634	mCV22812342	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss136027354	ENSMUSSNP508520	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs30647677					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143655779 () rs orientation: forward

Symbol	Name	Function Class
Rr406686	regulatory region 406686	1532 bp distal
Rr586568	regulatory region 586568	1867 bp distal
Rr586569	regulatory region 586569	within coordinates