rs30647461 SNP Detail

Summary

• ID
  rs30647461
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129921565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGTGAAG GAAAAATGCT
  AACAGCTGAA AAGGGGACCC TTCAAGTTAG AAAGTACAAG GCAGTCTTTT TTTGGGGGGG
  CGGGGGGCTG GGGCGGGCAG TGTACTGTAA GCTGTGTTTC ATGGTAGTCT TGGTGTAGTA
  GGGACTTTTC TTTTTCTGCC TGTGGTTTTA TCTGTCCCTT GGGAAAGCCT GGAATGATCC
  K
  TTCTGTTCCA CCATTGAGCC TTCCAGCCTC AGACTGCTGC TACTGCTGGC TACGGTCTCT
  CCGAATGCCT TATTTTACTC TAGGGCGGTG GGTGTATGCA CTGTAGGAAT GGCCAGGGAA
  CATTATGAGG GAACAGCTGT CTGTCACATA GTAAACAGCG CCGGCTGCAG ATCAAGGCCA
  AGCCCGAACA CATGGTGGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46970163	NES10877614	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30647461					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46970163	NES10877614	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129921565 () rs orientation: forward

Symbol	Name	Function Class
Rr585136	regulatory region 585136	within coordinates
Rr585137	regulatory region 585137	518 bp proximal
Rr585138	regulatory region 585138	1999 bp proximal