rs30646102 SNP Detail

Summary

• ID
  rs30646102
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18416732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAGGATT TTGACTTCTC
  AAAGTTCTCA CAACAAAAGA GTGAGTTTCA CTCAGTTCTT TGATCTGCTT CCAGGAAACA
  AAGAAGGGCT TATCCCTGGT TCAACCTTCT CTCTAGCAGC TGCTGTTAGA AGTAATGGCT
  GATACATATG CAGCTAGAGT CAAGAGCTCC GGGGTACTGG TTAGTTCATA ATGTTGTTCC
  R
  CCTATAGGGT TGCAGATCCC TTTAGCTTCT TGGCTACTTT CTCTAGCTCC TCCATTGGCC
  TAGTCAGCCA TCACTGGAAA GAGAGGCCCA CTGGACACGC AAACTTTATA TGCCCCAGTA
  CAGGGGAACG CCAGGGCCAA AAAGGGGGAG TGGGTGGGTA GGGGAGTGGG GGTGGGTGGG
  TATGGGGGAC TTTTGGTATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45949117	mCV23959693	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss133034511	ENSMUSSNP2638868	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30646102					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18416732 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Rr379006	regulatory region 379006			1320 bp upstream
Rr626921	regulatory region 626921			1166 bp proximal