rs30645947 SNP Detail

Summary

• ID
  rs30645947
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146050672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAGTTTC CAGGCCTGAG
  TGGATTAGAA CCTAACTGAC TTCCAACTGC TTCTCGGGAA CGCTTGGGTA CAATGCAGTC
  ACTCTTCCAG AATGTGTGCT CTCTCTCTGA GCAGCACAGC CTCCTGCTGG CTCCCTGGGC
  AATTTTGACT TTTTTCTTAC ACTTATTGAT TTGCAGAGGT GTAAAAGCCA GACAATTGTG
  S
  GAGGCAGCCC TCTTCTACCA CGAAGGCTCC AGGGCTGTGT ATCTGCCTCA CCAGTCCCAG
  CTGAGGAATT TGAACAATGT TATTTAACAA CTTAAAAGGT GAAACAACGT AAATACAATA
  AATCGAAGGA AGGAAAGCTT TAAAAAAAAA AAGCAACTGC AGATGTAAGC AGGAATTTTT
  AAAGCATAGA AATCTGAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45450409	mCV24236767	ABI	CRAMUS_MOUSE	f	SNP	G	G	C				G		G
ss47026604	NES10845640	PERLEGEN	MM_PANEL2	f	SNP	G		C	G	C	G		G	G	G	G		C	C	C		G
ss136043403	ENSMUSSNP2639505	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						G
ss321010016	CHEV_3_146007881	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30645947					SNP	G	G	C	G	C	G	G	G	G	G	G	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026604	NES10845640	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146050672 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13916	CpG island 13916	368 bp proximal
Gm40167	predicted gene, 40167	1517 bp upstream
Rr587008	regulatory region 587008	878 bp distal
Rr587009	regulatory region 587009	1083 bp distal
Rr587010	regulatory region 587010	174 bp proximal
Rr587011	regulatory region 587011	480 bp proximal