rs30645292 SNP Detail

Summary

• ID
  rs30645292
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87020885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCCTTCTC TGGAGCAGGC
  TCCTCCCTCT GAGCCCTGGT CTTCCTTCTG ACATCTCCCT CGGAGCCTTC CACATCTTTC
  TGGAACTGTC CCTGTGGCGC CTGAGAAAGG AGGTAAGTAT TATGTCCTGC TCTTGTCACA
  GCCAGATCTG ATTACCGGCA TGGGTGATGG ACATGGTAGG CTGGGTCCTT AGCTCCTGGA
  R
  TGGGGTGATG GAGTTAGCTG TGGTTCTTTC TTTCTTTTTT AATTAGATAT TTTCTTTATT
  TACACTTCAA ATGTTATCCC CTTTCCTAGT TTCCCCGCTG AAAATCCCCT ATCCCCCTCC
  CTTCCCCTTC TCCCCAACCT ACCCACTCCC ATTCCTGGCC CTGGCATTCC CCTATACTGG
  GGCTTAGAGC CTTCACAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45450494	mCV27564051	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30645292					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87020885 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm19382	predicted gene, 19382			1358 bp upstream
Kirrel1	kirre like nephrin family adhesion molecule 1			Intron
				mRNA-UTR
Rr579439	regulatory region 579439			1223 bp proximal
Tssr33924	transcription start site region 33924			1304 bp upstream
Tssr33925	transcription start site region 33925			1133 bp upstream
Tssr33926	transcription start site region 33926			1109 bp upstream