rs30644917 SNP Detail

Summary

• ID
  rs30644917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119460211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCC TTTGCTGGGG CTTAGACTGG
  Y
  CAAAGTTAAG GCACACTTTC GTTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45948998	mCV25396585	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss321928138	CHEV_6_119433268	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30644917					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119460211 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17911	CpG island 17911	1951 bp distal
Fbxl14	F-box and leucine-rich repeat protein 14	mRNA-UTR
Rr637693	regulatory region 637693	935 bp distal
Rr637694	regulatory region 637694	within coordinates
Rr637695	regulatory region 637695	63 bp distal
Tssr58506	transcription start site region 58506	1856 bp downstream
Tssr58507	transcription start site region 58507	1762 bp downstream
Tssr58508	transcription start site region 58508	1709 bp downstream
Tssr58509	transcription start site region 58509	1687 bp downstream
Tssr58510	transcription start site region 58510	1299 bp downstream
Tssr62723	transcription start site region 62723	1670 bp upstream
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron