rs30644378 SNP Detail

Summary

• ID
  rs30644378
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:69664647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACTAAGTC AGAAAGCCAC GGAGCATCCA TGGCACCAAC
  AGGAACCAGA CTGTGACGAC CCTAGAGAGA CTGCCATTCA CCCCTGCCCT CTGGGTGACC
  R
  TTAGGTTCTC CACTCATGAG AATAAATCTC CAGAGCCTTC TGGTCTGGTC GCTTACAGCT
  GGTACTCTAC AGTTTAATTA ATGGCTACAC TTGCAAAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45449600	mCV24613280	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss135271401	ENSMUSSNP898965	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320793826	CHEV_3_69561236	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30644378					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:69664647 () rs orientation: forward

Symbol	Name	Function Class
9530051E23Rik	RIKEN cDNA 9530051E23 gene	941 bp downstream
Rr375162	regulatory region 375162	975 bp downstream
Rr578222	regulatory region 578222	1850 bp distal
Rr578223	regulatory region 578223	1957 bp distal
Rr578224	regulatory region 578224	424 bp distal
Rr578225	regulatory region 578225	642 bp distal