rs30643507 SNP Detail

Summary

• ID
  rs30643507
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:55648714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCT CCCCCAATCC CATCCCCCCC
  M
  ACTTTTCCCC TGAACTGAAG TCCAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45449589	mCV24853424	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
ss135190208	ENSMUSSNP2291113	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
ss320775756	CHEV_3_55545215	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30643507					SNP	A	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55648714 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nbea	neurobeachin			Intron
				Noncoding-Transcript-Variant
Rr576992	regulatory region 576992			within coordinates
Rr576993	regulatory region 576993			983 bp proximal
Tssr882	transcription start site region 882			684 bp downstream