rs30643487 SNP Detail

Summary

• ID
  rs30643487
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152986091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAAAAACC TTATGGAAAC
  TCTTAAGGGT ATGTTTCTGA GTTGGTCTTT ATATTATTAT TATTATTATT ATTATTATTA
  TTATTATTAT TATTATTAAT TATTATTATT ATCACCCTAC CACCTCCACT GTTAGCCTGG
  CATCCATGGC AGATCCAGCA TGCATTTGAC CTTGAGGTGA ATGATGACAT TATTGTCCAC
  R
  TTTTCTTTGA ATAAAGTTCT CTGCGTGGGT GGATTCATGT ATAGGTTTTA CAGCCTTTAT
  AATTAGGGGA TGTGAGAGTT AAGAAAAACA AAAACAACCA AAGGGGGGAA AAACAAAAAC
  AAAACAAAAC AAAAAGCCAA ACAAAAACCC CAACCTAAGT ACAAAATTAA ATGTCCAAAG
  CAAAGGAAAA AAAATCAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47470027	NES10330918	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	G	A	A	G		A	A	A	G		A
ss321030471	CHEV_3_152943418	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30643487					SNP	G	A	A	A	A	A	G	A	A	G	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47470027	NES10330918	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152986091 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587669	regulatory region 587669			1674 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant