rs30631909 SNP Detail

Summary

• ID
  rs30631909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153365862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGATGGT GACGGGTGAG
  GGGTGAACGA AAGAGGGGGC AGGAGCAGAG CAAGGCCTGA GCCTGAGCAG AGGCAGCGGG
  TGAGCTCACT CACTCAGCCT ACATCTGAAG CATCGGTCAT CCTAGGTGCC CCACAGCAGG
  ACCAGATCAG TGGGCAAGAC AGCAGGCTGG GCCAGTGGAG CATGGTGGTA GGAGCGGCTA
  Y
  AGTTTAACAC TGAGAGTTGG GACCTAGGAA ACACCGTAGC AAGTTGTTCT AAGAACAGGG
  TCTTGAGTAT GAGCTCAAGG ATGCCAGACT TGATTCACAG ACATCACTGA GCCAAGGGAG
  CTTCTCTGAG AAATGTCTGT GAGAGGCAGG GCAGAAAAAG GGAGCCATCA GGTTAGCTCC
  AGCTGGGGTG ATTCATCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47467621	NES10329141	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30631909					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467621	NES10329141	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153365862 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587719	regulatory region 587719			1365 bp distal
Rr587720	regulatory region 587720			1632 bp distal
Rr587721	regulatory region 587721			86 bp distal
Rr587722	regulatory region 587722			1777 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant