rs30629274 SNP Detail

Summary

• ID
  rs30629274
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153348043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCACGGTA CTGAACACTA
  ACCATATTTT TATGGCTAAT GTGAAAATTA GTTAGCTAAT GTGGATGTTA CCTTCCTAAC
  GTGGCGAGAG CCGTGGAAGC ATATAAAATA TTGCATATCG ATTAAATATA AGACAAGGGA
  TGTCTTAATA ATCCCCATGT GATTAAAAGA CAAGAACAGA CTCCATTCTC TGGCTCTATT
  W
  CATTTCAGTG ATGTAACAGG AATGAGACAG TTTACATCTG GAAGCCCTTA CCATATCAAT
  GATCAATCAG AAATCCTGAC TCCACAAACA GGTAGGCAGC CCACACTCTT CTACCAGTGA
  AACGGAAACA ACCAAAGCTT TCTTTCCCAA ACAGGATTGG GGTCAGCTCC TGAATTCTAC
  TTCTATTCCA GCCATAGGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45485159	mCV23621183	ABI	CRAMUS_MOUSE	f	SNP	T	A					A
ss47467774	NES10329336	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A		T	A	A	A	A	A	A	T	T
ss136110317	ENSMUSSNP4754386	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30629274					SNP	T	A	A	A	A	A	A	T	A	A	A	A	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467774	NES10329336	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153348043 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587714	regulatory region 587714			1422 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant