rs30629012 SNP Detail

Summary

• ID
  rs30629012
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153299226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTCTGAT GGTCCAGGTG
  GGGCCCTGCA GAGGACTCAA ACAAGGAAGC TTTTCCATGT AAATTTGATT GACTTGCTAT
  TGTTGTTTAT ATACTCTGTC TTCCATGGAT CCTTTGGGAA GCAGCTAATG AGACAGCAAC
  CACAGGCCTG ATAAATTAGT CCCAGAAACT CTAGTTTAAA AACAAGACTG GCTACTCGAT
  K
  CCTTCAAAGC AATCTCTGAA AGCAACGCAG TGATTCTCAT GGCTGCCTCT GTTGACTACA
  AAATGTACTC CGAAAATTGA ATTTTCTTGG AATTGCTACA CAGGGAAACT CAGGTGTGGA
  GCCAGTTTAT AGACTGACAG CCGGGATTCT AGGAAGGAGG TATGGGAAGA TGCAGAGCAG
  AGAGCTCAGC AGATGGGCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47468152	NES10329852	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30629012					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47468152	NES10329852	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153299226 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm32721	predicted gene, 32721			within coordinates
Rr587708	regulatory region 587708			1164 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant