rs30628825 SNP Detail

Summary

• ID
  rs30628825
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153428643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCCAAAAT CAAATGCAAA
  GGCCGAGCTT GTGCAGAATG CGTACCTTCT GTTCAGAACG TGGGCCCCAT ACTCCACCAC
  GCGTAGCTTT ATAAAGATGG CACAGGCTAC AGGATCCTCA GGGACCATCT AGGACCAAGT
  AGGTACAGCC TGCACGCAGC AGGCTACCAG TAGCCCAGAA CGGCCATGAA AGTGATCTGG
  R
  CATGAACGTG ACCCAGTACA TTTACAGACC ACAACATCAT GTTGCACAAA GTCACCACTA
  AAAGAGTAAA AGGAAAAAAA ATTTTTAAAT GCACCCCATT GCTTATAGGT GGCAGAGATT
  GAATAGTATA AGGACTCTCG GAGTCACCCC TAAAACAGTT TTAAAGTGTG AAGACAGCTT
  AAGATGGGGG GCTGGAATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47467090	NES10328098	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30628825					SNP	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467090	NES10328098	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153428643 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13961	CpG island 13961			1599 bp proximal
Rr587739	regulatory region 587739			597 bp proximal
Rr587740	regulatory region 587740			1043 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32435	transcription start site region 32435			899 bp upstream
Tssr36239	transcription start site region 36239			1949 bp upstream