rs30628571 SNP Detail

Summary

• ID
  rs30628571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153348378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTTTCTT TCCCAAACAG
  GATTGGGGTC AGCTCCTGAA TTCTACTTCT ATTCCAGCCA TAGGCCTGGA TAAAGTCAGT
  CCTAAATCAG TCAACACTAA CAATAGTAGC AATAACAATA GCTATTGTAC CTGTATGTCA
  GGATTAGTTC AGGACTTGAG TGGGGAAAAG AGGTTGGTTC TAGTTGGCCA AACATCTTCA
  Y
  AAAATGGAGC TGCTCTGAAT TTTTTTGGCT GAGGAAACTT GACCTCCACA ATGTAATTTG
  CTGAATGCTA CAGAGAGTAA CTGTTAAAGG AAAATTTAAA ACCCCGGCTT TTCCATAACA
  TGTTCACTGT GCAAATACTG TCTGAACGCC TACCATGTAC ACAGCTCAGT CCTGAACTTG
  ACCATGAACA GAAGAGAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47467771	NES10329337	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30628571					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467771	NES10329337	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153348378 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587714	regulatory region 587714			1087 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant