rs30627909 SNP Detail

Summary

• ID
  rs30627909
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153428725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGCTTTAT AAAGATGGCA
  CAGGCTACAG GATCCTCAGG GACCATCTAG GACCAAGTAG GTACAGCCTG CACGCAGCAG
  GCTACCAGTA GCCCAGAACG GCCATGAAAG TGATCTGGGC ATGAACGTGA CCCAGTACAT
  TTACAGACCA CAACATCATG TTGCACAAAG TCACCACTAA AAGAGTAAAA GGAAAAAAAA
  W
  TTTTAAATGC ACCCCATTGC TTATAGGTGG CAGAGATTGA ATAGTATAAG GACTCTCGGA
  GTCACCCCTA AAACAGTTTT AAAGTGTGAA GACAGCTTAA GATGGGGGGC TGGAATCCAG
  GTTCACTCTG TCCTTAACTT GGAGTTTAGG AAACTCAAGA CTCTTTCCCT TAAAAGTGGA
  GTTGCAAACA AGCACTGTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	NZW/LacJ
ss47467084	NES10328100	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	NZW/LacJ
rs30627909					SNP	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467084	NES10328100	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153428725 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587739	regulatory region 587739			515 bp proximal
Rr587740	regulatory region 587740			961 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32435	transcription start site region 32435			817 bp upstream