rs30627843 SNP Detail

Summary

• ID
  rs30627843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95182568 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACAGT GTCTTCTAAG TTGGGGCAGC
  Y
  ACGCCCACAA GAGACTCCAC ATTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46427463	mCV25314960	ABI	CRAMUS_MOUSE	f	SNP	T							C
ss46772825	NES10658851	PERLEGEN	MM_PANEL2	r	SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G
ss135510428	ENSMUSSNP1696610	ENSEMBL	ENSEMBL_Sanger	r	SNP								G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30627843					SNP	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46772825	NES10658851	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95182568 () rs orientation: reverse

Symbol	Name	Function Class
Prune1	prune exopolyphosphatase	Intron
Rr580881	regulatory region 580881	1500 bp distal
Rr580882	regulatory region 580882	1052 bp distal
Rr580883	regulatory region 580883	593 bp distal
Rr580884	regulatory region 580884	1700 bp proximal