rs30627766 SNP Detail

Summary

• ID
  rs30627766
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153349196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCTCCCA TACCAGTGTC
  CCTAGCACAG GACCCCGTTA TGTTGGAAAA TGGCCAGTGT GGGCAAAAAC TAAAGAAAAG
  GCCTCGCTAA GGCTGTAATG CAGGCCACTA GGTCAACAAC CGAGGCCTGA AAAATGAAGG
  CCTTCCAAAG TATTTTCAAG GATCGGTGCT GTAAGGCAGA ATAGAGAGGG AGGATTTTCA
  S
  CTCGGCAAAT GGAGAGCTAA GCGCCCTTGC TAAGAGGTTT GCAGAAAGCC TGAGGCTTAA
  CCAGAGAAGA AGAACCGAGC TGAGAAGGAA CCAACCTCCC TGCTCAGCCC CAAGACTCTC
  GGGAATAAGT GTCAAGGACT CTTAACATTG GGCAGGAACA TTTGGGGCTC CTGAGCAGAC
  CCAACGCCAT CTTCTTGCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47467756	NES10329342	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	C	C	C	G	G
ss136110326	ENSMUSSNP394533	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30627766					SNP	C	C	C	C	G	C	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467756	NES10329342	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153349196 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587714	regulatory region 587714			269 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant