rs30627408 SNP Detail

Summary

• ID
  rs30627408
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153300099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTTATGT TCCCGGACAA
  ACAATGTCAC CTCTCACTTC TACTAGAACC AAACAGGAAC AGCAGCTGGC AGTGTGTATC
  AGTCGGTTAT GACTCCTCAG GAGTCTGCAG ACACGTCCTC AGTTGTCATT CAGCCACTGT
  GATGTTTCCA GTGCATGCTC ACATTCTAGG CAGGTAAGGT TACGTCACTT GCTGTCTGCA
  R
  TTGTTCTTAC CCTTGGGGAA AATACTGCCC CCAATAAGAA TGTTCTTGAT ATCAAAGCTT
  CTTAATATTT GGGCTGTAAT TCATATGAAG ACATGAAAAA TCTGGCAACA GTAAAAGATT
  TCTAAACATA AAAAAAAAAA AAAAACCCAA AAACTAATTC AAAACCAAGC GTGTACTGCA
  CCCAAGGTGT TTGGGGCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47468128	NES10329860	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A	A	A	A	A	A	A	A	G	G
ss136109445	ENSMUSSNP4231121	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30627408					SNP	G	G	A	A	A	G	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47468128	NES10329860	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153300099 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm32721	predicted gene, 32721			within coordinates
Gm52633	predicted gene, 52633			1640 bp upstream
Rr587708	regulatory region 587708			291 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant