rs30627052 SNP Detail

Summary

• ID
  rs30627052
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153430668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGC GGAGCTCGCA TGCGGCCCAC
  M
  GCCGAGCTGT TACCTTGAGG ATGCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	DBA/2J	LG/J	NZW/LacJ	SM/J
ss47467075	NES10328074	PERLEGEN	MM_PANEL2	f	SNP	A	C	C		C
ss321031064	CHEV_3_153387995	CHEVERUD	SCREENING_POP	f	SNP				A		C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	DBA/2J	LG/J	NZW/LacJ	SM/J
rs30627052					SNP	A	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467075	NES10328074	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153430668 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13961	CpG island 13961			within coordinates
Rr587739	regulatory region 587739			1119 bp distal
Rr587740	regulatory region 587740			within coordinates
Rr587741	regulatory region 587741			133 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant
Tssr32435	transcription start site region 32435			1118 bp downstream
Tssr36240	transcription start site region 36240			73 bp downstream