rs30626824 SNP Detail

Summary

• ID
  rs30626824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:71979059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGCTATCA TGGACTCTCT
  TTCTTCTTAA ATGAAAATCT CCCACGCTAG ACATTCAGGA GAACTAATAA TTTATAGATA
  GATAGATAAT ATGAGTGCTC AACACACTTG CTGCTATGGT GGTATCAGGT GGGATTTTGC
  ATCTTCTAAA TTAGAAAATA TCAGAGGAAA AACAAGCTAA ATATCCAAGA TTTCATGGTT
  Y
  CTTCAAACTT AAAGGTCATG GATCATTCTA ACAAAATAAA TTCCAAATTG CTCTAATTCA
  TATATTTCAA ATTTGCATCA ATCTGTTGTT AAACAATTAC TTTGATGCTC AAGGGAAGTT
  TGATATATAT ATTTAAGTTA CTGAATCACC AGGCAGAGTA GCACACACCT TTAATCCTAG
  CATTTGGGAG GCAAAGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47467854	NES11051012	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30626824					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467854	NES11051012	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:71979059 () rs orientation: forward

Symbol	Name	Function Class
Gm57173	predicted gene, 57173	1282 bp upstream
Rr412725	regulatory region 412725	1293 bp distal
Rr412726	regulatory region 412726	961 bp distal
Rr412727	regulatory region 412727	1738 bp proximal
Tssr12152	transcription start site region 12152	1281 bp upstream