rs30625086 SNP Detail

Summary

• ID
  rs30625086
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:71977086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTATTATT GTTAATATAC TGACCTTTGA
  AGAAGATTCT CTGAGAAGTT TGCCATGGTT AATGCACTGG GTTAAATTAC TTTCTCAAAG
  CAGTTACTCC GTCATCTGAC TGGGCCCTAA AGGACCTTTC GAAAGAATTT TTCACTTGAT
  R
  GGAAATTCTG ATGAAGGTTC ATGAGCACTG GGCCTGAGGC AGGTTCTGAG GGCAGAGGCT
  AAGGAGATGC TCCCAGAAGA TACTGGATGG AGTCCGTGAG GAAAGCTGTT AACTGCGCCT
  CCCACGTCCT ATAAACATCA CATGAACAAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47467836	NES11051102	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	G	A	G	G	G		G	G	G	G		A
ss319787584	CHEV_1_71984501	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30625086					SNP	G	A	A	G	G	A	G	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467836	NES11051102	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:71977086 () rs orientation: forward

Symbol	Name	Function Class
Gm57173	predicted gene, 57173	within coordinates
Rr412725	regulatory region 412725	453 bp proximal
Rr412726	regulatory region 412726	681 bp proximal
Tssr12152	transcription start site region 12152	688 bp downstream