rs30623604 SNP Detail

Summary

• ID
  rs30623604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153441335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCATACA CAGTGGTGAT
  TGTCAACTAA TAAACAGACT ATTCTCTTTT CCACGTTCTG GGTGCTCATG GTTCCCCGAT
  AGGTTTTTTT TTTTCTTCTA TTGAGCTTCT CTTAGCATCC TCCTTGTGTT CTCAACATTC
  AAAAACTCAA TCACCTTTCC CAGAAAGGGA CCAGGGACAG TGAAAGCATG GGGACCTCTT
  Y
  CGCATCTCCA ACTCATTCTA TTCAAGGATA CAGTGCTGAC ACAGACCCAC TGCCACACAA
  ATGTCCAGCC TTTCCTAATG AGCCCCCTGA ATTGTACTTC GGTGTTAAAC AAGATGGGAC
  TGGCTGGGTC CATCTTGGAA TAACGAAAAT CTTATCGGGG GAGGAATTTT GTGGCTTCTT
  TAGAACACAG CCCCCGGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47467006	NES10327889	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30623604					SNP	C	T	T	T	C	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47467006	NES10327889	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153441335 () rs orientation: forward

Symbol	Name	Function Class
Rr587744	regulatory region 587744	1254 bp distal
Rr587745	regulatory region 587745	1132 bp proximal
Tssr36241	transcription start site region 36241	1769 bp upstream