rs30623453 SNP Detail

Summary

• ID
  rs30623453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129475594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTATATAT AATTCATTTA
  AGCATGCTAT CAAGTCCCAG GTAATTACGA CCGCTAGTGA GTATGGGTAA CTACTATCTT
  GCAGGGATCC CCAAGCTGTT CTTTCATAGG TGGCAGCTCA GAAGGCAGAG TGCTGAGAGA
  GGCCCAGATA AGCACAACAG CACTTCTCTT TACTCAACAA ACCATTTTTG TCATTGTTTG
  Y
  ATGGTTCAGA CTCACGGCAC ACTTGCAATG CAGGCTGAGC AGAGCCGACT GGCCTGCACT
  CAGGCCAGAC AGGTTAGGTA TTAAAAGAAA TCAAACAGAA AGAGGAAGAA CAGAAGTAGG
  CCATGCTCTG GGCACAGGAC CCAGGCCGGC AAAGTCTTTC CTTATCAGTA AGTGACCGGG
  TGAAGGACTG CCCCAAGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46966619	NES10893239	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30623453					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46966619	NES10893239	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129475594 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Egf	epidermal growth factor			Intron
				Noncoding-Transcript-Variant
Rr585059	regulatory region 585059			1698 bp distal
Rr585060	regulatory region 585060			1164 bp distal
Rr585061	regulatory region 585061			480 bp distal
Rr585062	regulatory region 585062			within coordinates
Rr585063	regulatory region 585063			502 bp proximal
Rr585064	regulatory region 585064			1514 bp proximal
Tssr35620	transcription start site region 35620			1340 bp downstream